[edit] Unfortunately due to computer crash, local copy of changes is lost.

I noticed that max pods is always 16 and doesn't depend on starting class (as implied by the values in Globals.lua). Design decision or ToDo list?
The skills seem to be pretty much useless (or have very little impact on game play). You might as well drop the whole hired crew and skill system.
The beginning quests could be cut down quite a bit, IMO. For example:
* ONE quest to visit each area in the space station.
* Drop 'shakedown flight' and combine it with the trip to scan Islay.
* Higher screen resolution (e.g. 1280 x 1024 )
Mostly done I coded a personalised version to do this myself. It's got a bunch of rough patches, but it's usable as it is.
* Movement in Combat Encounter screen is not consistent with other screens.
Mostly done I changed it to automatically slow down when thrust not applied. This makes it a lot easier to pick up the 'Power Ups' and dropped cargo.
* Hide/Show HUD
* Simpler trade screen
Partly done I've started working on this on my personalised version. At the least I want to be able to add all of an item to the Sell / Buy list by either right-clicking or double-clicking the list item. At present it's
+ Click Iron
+ Click 'Sell'
+ Click 'All'
+ Click 'OK'
Having to repeat that a dozen times is a pain in the butt.
I have changed that so simply
+ Right-click Iron
for the same effect - cutting down 'clicks' to 1/4 the present needed.
Other things that would be nice would be an "Sell All" button that adds your entire cargo list to the 'To Sell' list.
e.g.
+ Click 'Minerals' Filter
+ Click 'Sell All'
+ Click 'Confirm'
to sell all minerals from your cargo bay.
It would also be nice to be able to remove items from the Sell or Buy lists that are waiting confirmation.
e.g.
+ Click 'Minerals' Filter
+ Click 'Sell All'
+ Right-click 'Endurium' in sell list.
+ Click 'Confirm'
to sell all minerals apart from Endurium
* Clearer Save/Load screen
* Keyboard shortcuts
* Screenshot functionality (should be quite easy with Allegro)
* Record of completed missions
* Ability to have more than one mission in progress at once (and see what the current task is for each one in progress)